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Z. ramigera biosynthetic thiolase, acetylated enzyme complexed with CoA at pH 9.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M3K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.79 55.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.374 α = 90 b = 79.059 β = 92.58 c = 148.881 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.1920 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.903 30 96.6 0.089 8.1 2.895 149016 -3 27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.903 2 84.6 0.297 2.4 2.07 9684
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1M3K 1.903 20 142241 142241 6714 97.18 0.18147 0.18147 0.1795 0.1909 0.22269 0.2304 COPIED FROM 1M3K 17.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -1.34 2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.676 r_scangle_it 3.392 r_mcangle_it 2.751 r_scbond_it 2.376 r_mcbond_it 1.983 r_angle_refined_deg 1.681 r_angle_other_deg 0.915 r_symmetry_hbond_refined 0.265 r_symmetry_vdw_other 0.256 r_nbd_other 0.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.676 r_scangle_it 3.392 r_mcangle_it 2.751 r_scbond_it 2.376 r_mcbond_it 1.983 r_angle_refined_deg 1.681 r_angle_other_deg 0.915 r_symmetry_hbond_refined 0.265 r_symmetry_vdw_other 0.256 r_nbd_other 0.251 r_xyhbond_nbd_refined 0.233 r_nbd_refined 0.23 r_symmetry_vdw_refined 0.202 r_chiral_restr 0.117 r_nbtor_other 0.088 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11292 Nucleic Acid Atoms Solvent Atoms 1275 Heterogen Atoms 116
Software Software Software Name Purpose XDS data scaling XDS data reduction REFMAC refinement