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Crystal Structure of CYP175A1 from Thermus thermophillus strain HB27
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FAG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 295 0.4 M Na/K Tartrate, 100 mM Na Phosphate/citrate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.25 44.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.538 α = 90 b = 90.699 β = 99.68 c = 74.516 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 160 CCD ADSC QUANTUM 4 a front end, vertically collimating premirror, double-crystal silicon (111) monochromator with a fixed-height exit beam, toroidal focusing mirror 2001-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.10030 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 95.4 78342 77717 1000
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 89.4 0.405 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FAG 1.8 19.99 78342 67977 3639 91.99 0.207 0.18376 0.18167 0.1899 0.22229 0.2283 RANDOM 32.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 -1.52 -0.77 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.776 r_scangle_it 4.515 r_scbond_it 3.122 r_mcangle_it 2.292 r_angle_refined_deg 2.035 r_mcbond_it 1.436 r_angle_other_deg 1.004 r_symmetry_hbond_refined 0.35 r_symmetry_vdw_other 0.343 r_nbd_other 0.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.776 r_scangle_it 4.515 r_scbond_it 3.122 r_mcangle_it 2.292 r_angle_refined_deg 2.035 r_mcbond_it 1.436 r_angle_other_deg 1.004 r_symmetry_hbond_refined 0.35 r_symmetry_vdw_other 0.343 r_nbd_other 0.256 r_symmetry_vdw_refined 0.244 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.145 r_nbtor_other 0.09 r_bond_refined_d 0.027 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6126 Nucleic Acid Atoms Solvent Atoms 528 Heterogen Atoms 178
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling AMoRE phasing REFMAC refinement HKL-2000 data reduction