1N8M
Solution structure of Pi4, a four disulfide bridged scorpion toxin active on potassium channels
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2.5 mM Pi4, 5 mM CD3COONa, pH 4.0, 10% D2O | 90% H2O/10% D2O | 5 | 4.0 | ambient | 303 | |
2 | P-COSY | 2.5 mM Pi4, 5 mM CD3COONa, pH 4.0, 10% D2O | 90% H2O/10% D2O | 5 | 4.0 | ambient | 303 | |
3 | 2D NOESY | 3.2 mM Pi4, 5 mM CD3COONa, pD 4.0 | 100% D2O | 5 | 4.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | Structures are based on a total of 705 constraints, 679 are meaningful nOe derived constraints (642 unambiguous, 37 ambiguous), 16 are dihedral (phi) angle constraints and 10 are hydrogen bonds. The four disulfide bridges (CYS 6-27, 12-32, 16-34, 22-37) were included in the topology file used for the calculations. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Disulfide bridges were determined by NMR and by N-terminal sequencing of proteolysis peptides. Distance constraints were derived from initial nOe build up rates using 2D NOESY experiments with mixing times of 70, 100, 150, 200 and 250 ms in H2O and D2O. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian Inc. |
2 | data analysis | NMRView | 5.03 | Johnson |
3 | structure solution | ARIA | 1.2 | Nilges |
4 | structure solution | CNS | 1.1 | Brunger |
5 | refinement | CNS | 1.1 | Brunger |