1N87
Solution structure of the U-box of Prp19
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM Prp19(1-73); UL 20mM phosphate buffer pH 7.0; 20mM NaCl | 95% H2O/5% D2O | 0.28 | 7.0 | ambient | 303 | |
2 | 2D TOCSY | 1mM Prp19(1-73); UL 20mM phosphate buffer pH 7.0; 20mM NaCl | 95% H2O/5% D2O | 0.28 | 7.0 | ambient | 303 | |
3 | 3D_15N-separated_NOESY | 1mM Prp19(1-73); U-15N 20mM phosphate buffer pH 7.0; 20mM NaCl | 95% H2O/5% D2O | 0.28 | 7.0 | ambient | 303 | |
4 | 3D_13C-separated_NOESY | 1mM Prp19(1-73); U-15N,13C 20mM phosphate buffer pH 7.0; 20mM NaCl | 95% H2O/5% D2O | 0.28 | 7.0 | ambient | 303 | |
5 | 3D_13C-separated_NOESY | 1mM Prp19(1-73); U-15N,13C 20mM phosphate buffer pH 7.0; 20mM NaCl | 99% D2O | 0.28 | 7.0 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
Torsion angle dynamics, Molecular dynamics | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Guentert |
2 | collection | XwinNMR | 2.6 | Bruker |
3 | data analysis | XEASY | 1.3 | Bartels |
4 | refinement | Amber | 6.0 | Pearlman |