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NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY Respinomycin D, D(AGACGTCT)2, TSP, NaN3, Na-ETDA D2O 100mM NaCl 10mM Na2HPO4 7 1 atm 298 2 2D TOCSY Respinomycin D, D(AGACGTCT)2, TSP, NaN3, Na-ETDA D2O 100mM NaCl 10mM Na2HPO4 7 1 atm 298 3 DQF-COSY Respinomycin D, D(AGACGTCT)2, TSP, NaN3, Na-ETDA D2O 100mM NaCl 10mM Na2HPO4 7 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500
NMR Refinement Method Details Software molecular dynamics Sample was subjected to 500ps of restrained molecular dynamics. Using the AMBER94 Force Field SANDER(AMBER)
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1 Representative Model 1 (n/a)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution SANDER(AMBER) 4.1 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN 2 refinement SANDER(AMBER) 4.1 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN