☰ Navigation Tabs
Crystal structure of Leishmania mexicana Glycerol-3-phosphate dehydrogenase complexed with DHAP and NAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 PEG 8000, ammonium sulfate, cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.96 58.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.745 α = 90 b = 77.745 β = 90 c = 266.631 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD ADSC QUANTUM 4 2002-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 92 0.063 0.063 19.2 12 62860 62860 20.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 61.5 0.306 0.306 2.1 2.5 7102
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 47.37 62860 62860 3373 92.25 0.1744 0.17449 0.17337 0.19506 0.1924 RANDOM 21.128
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.37 0.68 1.37 -2.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.501 r_scangle_it 3.606 r_scbond_it 2.036 r_mcangle_it 1.386 r_angle_refined_deg 1.341 r_angle_other_deg 0.765 r_mcbond_it 0.702 r_symmetry_hbond_refined 0.583 r_symmetry_vdw_other 0.245 r_nbd_other 0.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.501 r_scangle_it 3.606 r_scbond_it 2.036 r_mcangle_it 1.386 r_angle_refined_deg 1.341 r_angle_other_deg 0.765 r_mcbond_it 0.702 r_symmetry_hbond_refined 0.583 r_symmetry_vdw_other 0.245 r_nbd_other 0.234 r_nbd_refined 0.216 r_chiral_restr 0.168 r_symmetry_vdw_refined 0.167 r_xyhbond_nbd_refined 0.163 r_nbtor_other 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5254 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 108
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling AMoRE phasing REFMAC refinement HKL-2000 data reduction