1MM0
Solution structure of termicin, an antimicrobial peptide from the termite Pseudacanthotermes spiniger
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2mM Termicin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 3.9 | ambient | 300 | ||
2 | 2D TOCSY | 2mM Termicin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 3.9 | ambient | 300 | ||
3 | DQF-COSY | 2mM Termicin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 3.9 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | the structures are based on a total of 834 restraints, 796 NOE-derived distance constraints, 26 dihedral angle restraints, 12 distance restraints from hydrogen bonds. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | VNMR | 6.1 | |
2 | data analysis | XEASY | 6001 | Bartels et al. |
3 | data analysis | ARIA | 1.1 | Linge et al |
4 | refinement | CNS | 1.1 | Brunger et al |