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Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 366D ddf073 structure, with corrected sequence
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 290.15 Ammonium acetate, magnesium acetate, sodium cacodylate, PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290.15K
Crystal Properties Matthews coefficient Solvent content 2.31 55.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.186 α = 90 b = 30.186 β = 90 c = 39.443 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8068 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 10 94.72 8308 4 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.15 95.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R ddf073 structure, with corrected sequence 1.1 10 4 7900 7350 408 94.8 0.1325 0.1325 0.1325 0.1517 0.1864 0.1943 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 7 81 190.25
RMS Deviations Key Refinement Restraint Deviation s_similar_dist 0.07 s_similar_adp_cmpnt 0.046 s_bond_d 0.037 s_anti_bump_dis_restr 0.015 s_rigid_bond_adp_cmpnt 0.005 s_from_restr_planes 0.0028 s_angle_d s_zero_chiral_vol s_non_zero_chiral_vol s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 120 Solvent Atoms 37 Heterogen Atoms 55
Software Software Software Name Purpose MAR345 data collection XDS data reduction SHELX model building SHELXL-97 refinement XDS data scaling SHELX phasing