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Biosynthetic thiolase, C89A mutant, complexed with acetyl coenzyme A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 293K
Crystal Properties Matthews coefficient Solvent content 3.1 60.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.6 α = 90 b = 79.68 β = 92.83 c = 149.321 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.09785 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 50 90.8 0.08 8.8 3 148799 148799 -3 30
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.95 93.3 0.353 2.9 2.8 17964
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DLU 1.87 20 148800 148800 6848 90.9 0.19461 0.19461 0.19228 0.2025 0.24229 0.2476 COPIED FROM 1DLU, MISSING RANGE COMPLETED RANDOMLY 20.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.23 0.3 -0.71 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.237 r_scangle_it 4.234 r_mcangle_it 3.442 r_scbond_it 2.925 r_mcbond_it 2.501 r_angle_refined_deg 1.602 r_angle_other_deg 0.937 r_symmetry_hbond_refined 0.28 r_symmetry_vdw_other 0.255 r_nbd_other 0.247
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.237 r_scangle_it 4.234 r_mcangle_it 3.442 r_scbond_it 2.925 r_mcbond_it 2.501 r_angle_refined_deg 1.602 r_angle_other_deg 0.937 r_symmetry_hbond_refined 0.28 r_symmetry_vdw_other 0.255 r_nbd_other 0.247 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.212 r_symmetry_vdw_refined 0.205 r_chiral_restr 0.107 r_nbtor_other 0.088 r_gen_planes_other 0.022 r_bond_refined_d 0.017 r_bond_other_d 0.017 r_gen_planes_refined 0.013 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11276 Nucleic Acid Atoms Solvent Atoms 1052 Heterogen Atoms 224
Software Software Software Name Purpose XDS data scaling XDS data reduction REFMAC refinement