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biosynthetic thiolase, inactive C89A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 295K
Crystal Properties Matthews coefficient Solvent content 3.07 59.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.37 α = 90 b = 79.199 β = 92.32 c = 148.863 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2001-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.915 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 90 0.079 10.5 3.3 193811 193811 -3 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 56.7 0.329 2.5 2.1 19129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DLU 1.7 20 -3 193695 193695 8981 90.07 0.20126 0.20126 0.19924 0.2114 0.24296 0.2501 RANDOM 13.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.72 -1.36 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.392 r_scangle_it 4.769 r_scbond_it 3.448 r_mcangle_it 3.161 r_mcbond_it 2.409 r_angle_refined_deg 1.675 r_angle_other_deg 0.931 r_symmetry_vdw_refined 0.284 r_symmetry_vdw_other 0.279 r_nbd_other 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.392 r_scangle_it 4.769 r_scbond_it 3.448 r_mcangle_it 3.161 r_mcbond_it 2.409 r_angle_refined_deg 1.675 r_angle_other_deg 0.931 r_symmetry_vdw_refined 0.284 r_symmetry_vdw_other 0.279 r_nbd_other 0.25 r_xyhbond_nbd_refined 0.236 r_nbd_refined 0.223 r_symmetry_hbond_refined 0.217 r_chiral_restr 0.113 r_nbtor_other 0.087 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11328 Nucleic Acid Atoms Solvent Atoms 1159 Heterogen Atoms 32
Software Software Software Name Purpose XDS data scaling XDS data reduction REFMAC refinement