Solution structure of a circular form of the N-terminal SH3 domain (E132C, E133G, R191G mutant) from oncogene protein c-Crk
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D TOCSY | 1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3 | 90% H2O/10% D2O | 100 mM NaCl | 7.2 | ambient | 307 | |
| 2 | 2D NOESY | 1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3 | 90% H2O/10% D2O | 100 mM NaCl | 7.2 | ambient | 307 | |
| 3 | DQF-COSY | 1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3 | 90% H2O/10% D2O | 100 mM NaCl | 7.2 | ambient | 307 | |
| 4 | 2D HSQC | 1mM SH3 U-15N, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3 | 90% H2O/10% D2O | 100 mM NaCl | 7.2 | ambient | 307 | |
| 5 | 2D TOCSY | 1mM SH3 U-15N, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3 | 90% H2O/10% D2O | 100 mM NaCl | 7.2 | ambient | 307 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| Simulated annealing combined with torsion angle dynamics | The structures are based on 1010 restraints, 913 are NOE-derived distance contraints, 25 dihedral angle constraints, and 72 distance restraints from hydrogen bonds. Structures were calculated using program DYANA. No further refinement was performed. | XwinNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest target function |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest target function) |
| Additional NMR Experimental Information | |
|---|---|
| Details | This structure was determined using standard 2D homonuclear techniques combined with 2D 1H-15N HSQC data. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | XwinNMR | 2.6,3.0 | Bruker |
| 2 | data analysis | XEASY | 1.3.1.3. | Bartels, Xia, Wuethrich |
| 3 | structure solution | DYANA | 1.5 | Guentert |
| 4 | refinement | DYANA | Guentert, Wuethrich | |














