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Solution structure of a circular form of the N-terminal SH3 domain (A134C, E135G, R191G mutant) from oncogene protein c-Crk.
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D TOCSY
1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3
90% H2O/10% D2O
100 mM NaCl
7.2
ambient
307
2
2D NOESY
1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3
90% H2O/10% D2O
100 mM NaCl
7.2
ambient
307
3
DQF-COSY
1mM SH3 NA, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3
90% H2O/10% D2O
100 mM NaCl
7.2
ambient
307
4
2D HSQC
1mM SH3 U-15N, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3
90% H2O/10% D2O
100 mM NaCl
7.2
ambient
307
5
2D TOCSY
1mM SH3 U-15N, 20mM sodium phosphate, 20 mM DTT-d10, 100 mM NaCl, 0.1% (w/v) NaN3
90% H2O/10% D2O
100 mM NaCl
7.2
ambient
307
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DMX
500
2
Bruker
DMX
600
3
Bruker
DRX
600
NMR Refinement
Method
Details
Software
Simulated annealing combined with torsion angle dynamics
The structures are based on 1151 restraints, 1054 are NOE-derived distance contraints, 25 dihedral angle constraints, and 72 distance restraints from hydrogen bonds. Structures were calculated using program DYANA. No further refinement was performed.
XwinNMR
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest target function
Conformers Calculated Total Number
200
Conformers Submitted Total Number
20
Representative Model
1 (lowest target function)
Additional NMR Experimental Information
Details
This structure was determined using standard 2D homonuclear techniques combined with 2D 1H-15N HSQC data.