☰ Navigation Tabs
Crystal structure of biosynthetic thiolase, C89A mutant, complexed with acetoacetyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLU PDB ENTRY 1DLU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 lithium sulphate, ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP at 295K
Crystal Properties Matthews coefficient Solvent content 3.05 59.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.219 α = 90 b = 79.219 β = 92.48 c = 148.288 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 0.980 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.6 0.118 7 3.2 141630 141630 -3 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 99.1 0.364 2.9 3.1 19515
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DLU 1.95 20 141522 135151 6371 99.65 0.213 0.21307 0.21088 0.2218 0.25844 0.265 COPIED FROM PDB ENTRY 1DLU,
THE MISSING RESOLUTION RANGE COMPLETED RANDOMLY 14.832
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.96 -1.8 2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.939 r_scangle_it 3.483 r_mcangle_it 3.018 r_scbond_it 2.572 r_mcbond_it 2.408 r_angle_refined_deg 1.617 r_angle_other_deg 0.913 r_symmetry_vdw_other 0.259 r_symmetry_vdw_refined 0.256 r_nbd_other 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.939 r_scangle_it 3.483 r_mcangle_it 3.018 r_scbond_it 2.572 r_mcbond_it 2.408 r_angle_refined_deg 1.617 r_angle_other_deg 0.913 r_symmetry_vdw_other 0.259 r_symmetry_vdw_refined 0.256 r_nbd_other 0.242 r_xyhbond_nbd_refined 0.235 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.178 r_chiral_restr 0.097 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11276 Nucleic Acid Atoms Solvent Atoms 1002 Heterogen Atoms 128
Software Software Software Name Purpose XDS data scaling XDS data reduction REFMAC refinement