SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 0.5 mM hERR2 U-15N 13C, 0.5 mM DNA Strand 1, 0.5 mM DNA Strand 2, 20 mM K2SO4, 50 M ZnSO4, 2 mM dithiothreitol (DTT), 0.001% NaN3 pH 6.8 | 100% D20 | 20 mM K2SO4 | 6.8 | ambient | 310 | |
| 2 | 3D_15N-separated_NOESY | 0.5 mM hERR2 U-15N, 0.5 mM DNA Strand 1, 0.5 mM DNA Strand 2, 20 mM K2SO4, 50 M ZnSO4, 2 mM dithiothreitol (DTT), 0.001% NaN3 pH 6.8 | 5% D2O, 95% H20 | 20 mM K2SO4 | 6.8 | ambient | 310 | |
| 3 | 2D Filter Edit Noesy | 0.5 mM hERR2 U-15N 13C, 0.5 mM DNA Strand 1, 0.5 mM DNA Strand 2, 20 mM K2SO4, 50 M ZnSO4, 2 mM dithiothreitol (DTT), 0.001% NaN3 pH 6.8 | 100% D20 | 20 mM K2SO4 | 6.8 | ambient | 310 | |
| 4 | 2D Filter Filter Noesy | 0.5 mM hERR2 U-15N, 0.5 mM DNA Strand 1, 0.5 mM DNA Strand 2, 20 mM K2SO4, 50 M ZnSO4, 2 mM dithiothreitol (DTT), 0.001% NaN3 pH 6.8 | 5% D2O, 95% H20 | 20 mM K2SO4 | 6.8 | ambient | 310 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| 2 | Bruker | DRX | 800 |
| 3 | Bruker | DMX | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry simulated annealing | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 32 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 2.1 | F.Delaglio, S.Grzesiek, G.W.Vuister, Z.Guang, J.Pfeifer, A.Bax |
| 2 | data analysis | NMRView | 4.1.3 | B.A.Johnson, R.A.Blevins |
| 3 | refinement | Amber | 6.0 | D.A.Case, D.A.Pearlman, et.al. |
| 4 | refinement | DYANA | 1.5 | P.Gntert, C.Mumenthaler, K.Wthrich |
| 5 | structure solution | Amber | 6.0 | D.A.Case, D.A.Pearlman, J.W.Caldwell, T.E.Cheatham III, W.S.Ross, C.L.Simmerling, T.A.Darden, K.M.Merz, R.V.Stanton, A.L.Cheng, J.J.Vincent, M.Crowley, V.Tsui, R.J.Radmer, Y.Duan, J.Pitera, I.Massova, G.L.Seibel, U.C.Singh, P.K.Weiner, and P.A.Kollman |
