1LL1

HYDROXO BRIDGE MET FORM HEMOCYANIN FROM LIMULUS


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.8PROTEIN WAS CRYSTALLIZED FROM 4-6% PEG 3350, 0.2M BIS-TRIS, 0.5M NACL, 5MM H2O2. PH IN THE DROP NEAR 6.8.
Crystal Properties
Matthews coefficientSolvent content
2.651.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.61α = 90
b = 116.61β = 90
c = 285.61γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287AREA DETECTORXUONG-HAMLIN MULTIWIRECOLLIMATOR1996-09-12M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.558.387.60.080.087.13.922669134.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.52.639.40.1880.1883.91.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LLA2.5560221960227688.60.1670.1670.23RANDOM29.8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
17.4347.06417.43417.24
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d23.1
x_scangle_it6.195
x_scbond_it4.297
x_mcangle_it4.242
x_mcbond_it2.76
x_angle_deg1.6
x_improper_angle_d1
x_bond_d0.006
x_bond_d_na
x_bond_d_prot
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d23.1
x_scangle_it6.195
x_scbond_it4.297
x_mcangle_it4.242
x_mcbond_it2.76
x_angle_deg1.6
x_improper_angle_d1
x_bond_d0.006
x_bond_d_na
x_bond_d_prot
x_angle_d
x_angle_d_na
x_angle_d_prot
x_angle_deg_na
x_angle_deg_prot
x_dihedral_angle_d_na
x_dihedral_angle_d_prot
x_improper_angle_d_na
x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4763
Nucleic Acid Atoms
Solvent Atoms135
Heterogen Atoms4

Software

Software
Software NamePurpose
UCSDdata collection
SCALAdata scaling
X-PLORmodel building
X-PLORrefinement
UCSDdata reduction
CCP4data scaling
X-PLORphasing