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PORCINE KIDNEY FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH AN AMP-SITE INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FBP PDB ENTRY 1FBP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.2M Na Acetate, 13.75% PEG 4000, 0.1M Hepes pH7.0, 1mM F6P, 2mM MnCl2, 1mM inhibitor, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.23 44.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.87 α = 90 b = 73.446 β = 106.3 c = 78.025 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC mirrors 1999-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 40.26 93.8 0.106 13 32736 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 64.5 0.483 2.44 2.3 2255
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FBP 2.15 40.26 32734 32734 1639 93.62 0.19582 0.19582 0.19269 0.1957 0.25514 0.258 RANDOM 31.619
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 -1.12 -0.13 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 23.573 r_scangle_it 7.059 r_dihedral_angle_1_deg 5.056 r_scbond_it 4.894 r_mcangle_it 4.295 r_angle_refined_deg 3.04 r_mcbond_it 2.49 r_angle_other_deg 1.661 r_symmetry_vdw_other 0.422 r_symmetry_vdw_refined 0.366
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 23.573 r_scangle_it 7.059 r_dihedral_angle_1_deg 5.056 r_scbond_it 4.894 r_mcangle_it 4.295 r_angle_refined_deg 3.04 r_mcbond_it 2.49 r_angle_other_deg 1.661 r_symmetry_vdw_other 0.422 r_symmetry_vdw_refined 0.366 r_nbd_other 0.25 r_nbd_refined 0.244 r_symmetry_hbond_refined 0.242 r_chiral_restr 0.168 r_xyhbond_nbd_refined 0.148 r_nbtor_other 0.106 r_xyhbond_nbd_other 0.073 r_bond_refined_d 0.02 r_gen_planes_refined 0.013 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4767 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 74
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement