1LAI

Solution Structure of the B-DNA Duplex CGCGGTGTCCGCG.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1.8 mM DNA strand, 10 mM sodium phosphate, 100 mM NaCl, 50 uM EDTAD2O100 mM NaCl6.8ambient303
2DQF-COSY1.8 mM DNA strand, 10 mM sodium phosphate, 100 mM NaCl, 50 uM EDTAD2O100 mM NaCl6.8ambient303
331P-1H COSY1.8 mM DNA strand, 10 mM sodium phosphate, 100 mM NaCl, 50 uM EDTAD2O100 mM NaCl6.8ambient303
42D NOESY1.8 mM DNA strand, 1 mM sodium phosphate, 100 mM NaCl, 50 uM EDTAH2O/D2O100 mM NaCl6.8ambient278
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
Molecular dynamics using a simulated annealing protocol.UXNMR
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionUXNMR3.0Bruker
2data analysisFelix97.0, 2000Hare, D.
3iterative matrix relaxationMARDIGRAS3.2Borgias & James
4refinementX-PLOR3.8Brunger, A.