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Crystal structure of RhoGDI Glu(154,155)Ala mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 294 PEG 4000, Tris-HCl, Lithium sulfate, methylpentane diol, pH 8.5, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.46 49.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.099 α = 79.19 b = 35.921 β = 82.66 c = 67.506 γ = 76.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 0.98 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 25 89 0.021 18.6 2 75214 75214 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.29 55 0.143 4629
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 25 1 69756 66305 3451 93.04 0.15962 0.15778 0.19532 0.217 RANDOM 19.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.01 -0.01 -0.02 -0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.027 r_dihedral_angle_1_deg 6.081 r_scangle_it 4.947 r_mcangle_it 3.64 r_scbond_it 3.405 r_sphericity_bonded 3.396 r_mcbond_it 2.579 r_sphericity_free 2.281 r_angle_refined_deg 2.212 r_rigid_bond_restr 1.578
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.027 r_dihedral_angle_1_deg 6.081 r_scangle_it 4.947 r_mcangle_it 3.64 r_scbond_it 3.405 r_sphericity_bonded 3.396 r_mcbond_it 2.579 r_sphericity_free 2.281 r_angle_refined_deg 2.212 r_rigid_bond_restr 1.578 r_angle_other_deg 0.875 r_symmetry_hbond_refined 0.319 r_nbd_refined 0.316 r_symmetry_vdw_refined 0.242 r_xyhbond_nbd_refined 0.24 r_nbd_other 0.228 r_symmetry_vdw_other 0.22 r_chiral_restr 0.098 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_bond_other_d r_nbtor_other r_xyhbond_nbd_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4396 Nucleic Acid Atoms Solvent Atoms 592 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement