1K4A
STRUCTURE OF AGAA RNA TETRALOOP, NMR, 20 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2mM RNA hairpin, 10mM NaCl, pH 6.3, 90% H2O, 10% D2O | 90% H2O/10% D2O | 10mM | 6.3 | 1 atm | 274 | |
2 | 2D NOESY | 2mM RNA hairpin, 10mM NaCl, pH 6.3, 90% H2O, 10% D2O | 99.99%D2o | 10mM | 6.3 | 1 atm | 293 | |
3 | 3D_13C-separated_NOESY | 1mM 13C/15N labeled RNA hairpin,10mM NaCl, pH 6.3, 99.99% D2O | 99.99%D2o | 10mM | 6.3 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | AMX | 500 |
3 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry simulated annealing | The structures are based on a total of 326 restraints, 300 are NOE-derived distance restraints, 54 dihedral angle restraints. Additional 26 distance restraints from hydrogen bonds are used in the stem region. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (this is the lowest energy structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | Bruker |
2 | data analysis | Felix | 2000 | MSI |
3 | refinement | X-PLOR | 3.1 | Brunger |