1JY4
B4DIMER: A DE NOVO DESIGNED EIGHT-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM B4dimer | CD3OH | unbuffered | ambient | 300 | ||
2 | DQF-COSY | 1mM B4dimer | CD3OH | unbuffered | ambient | 300 | ||
3 | TOCSY | 1mM B4dimer | CD3OH | unbuffered | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics/ simulated annealing | The ten structures were determined by NMR and torsion angle dynamics/simulated annealing methods. The peptide dimer was treated as a single entity and symmetry elements were not utilized during structure calculations. The structures are based on a total of 446 restraints, 398 are NOE-derived distance constraints,48 distance restraints are from hydrogen bonds. The list of constraints is available in the file dyana_upperconst.txt. Structure calculations were performed with the program DYANA-1.5 (P. Guentert, C. Mumenthaler, K. Wuthrich, J. Mol. Biol.(1997)Vol.273, 283-298). No violation of distance constraints from NOEs exceeded 0.3Angstroms. The ensemble of structures is superimposed over the best-structured region encompasing residues E11-L34. The average RMSDs between the superposed structures and the average structure are as follows: 0.75(chain A, residues 11-34, backbone atoms) 0.72(chain B, residues 11-34, backbone atoms. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 8 (closest to the average) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Guentert |
2 | refinement | DYANA | 1.5 | Guentert |