Solution Structure of the DNA-Binding Domain of Interleukin Enhancer Binding Factor
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY | 3mM ILF, 25mM phosphate buffer, 100mM NaCl | 90% H2O/10% D2O | 125 | 6 | ambient | 300 | |
| 2 | DQF-COSY | 3mM ILF, 25mM phosphate buffer, 100mM NaCl | 90% H2O/10% D2O | 125 | 6 | ambient | 300 | |
| 3 | TOCSY | 3mM ILF, 25mM phosphate buffer, 100mM NaCl | 90% H2O/10% D2O | 125 | 6 | ambient | 300 | |
| 4 | 3D_15N-separated_NOESY | 3mM ILF U-15N, 25mM phosphate buffer, 100mM NaCl | 90% H2O/10% D2O | 125 | 6 | ambient | 300 | |
| 5 | 3D_15N-separated_NOESY | 3mM ILF U-15N, 25mM phosphate buffer, 100mM NaCl | 90% H2O/10% D2O | 125 | 6 | ambient | 300 | |
| 6 | 3D_13C-separated_NOESY | 2mM ILF U-15N, 13C, 25mM phosphate buffer, 100mM NaCl | 90% H2O/10% D2O | 125 | 6 | ambient | 300 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| 2 | Bruker | DMX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| Hybrid distance geometry-dynamical simulated annealing method | X-PLOR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | all calculated structures submitted |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 20 (fewest violations) |
| Additional NMR Experimental Information | |
|---|---|
| Details | HNCA, HN(CO)CA, HNCBCA, CBCA(CO)NH, HBHA(CBCA)NH, HBHA(CBCACO)NH |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR | 3.85 | |
| 2 | data analysis | AURELIA | 2.7.10 | Neidig |
| 3 | processing | XwinNMR | 2.6 | Bruker |














