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Crystal structure of the monomeric isocitrate dehydrogenase in complex with isocitrate and Mn
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 HEPES, PEG6000, glycerol, manganese chloride, DL-isocitrate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.4051 α = 90 b = 119.0229 β = 99.0058 c = 128.217 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.9000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 98.9 0.083 0.071 8.6 3.6 237767 235314 3 24.474
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.06 96.7 0.388 0.327 2 3.2 33505
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD, Molecular Replacement method THROUGHOUT 1.95 10 233612 235314 23269 98.9 0.193 0.228 RANDOM 23.5096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.913 -1.92 3.002 0.911
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.65165 c_scangle_it 2.79 c_scbond_it 1.96 c_mcangle_it 1.68 c_angle_deg 1.22762 c_mcbond_it 1.16 c_improper_angle_d 0.82829 c_bond_d 0.00494
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22586 Nucleic Acid Atoms Solvent Atoms 2306 Heterogen Atoms 57
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing SHELXS phasing AMoRE phasing DM model building DMMulti model building CNS refinement CCP4 data scaling DM phasing DMMulti phasing