X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2FXB 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICRODIALYSIS6.5277ammonium sulfate, MES, pH 6.5, MICRODIALYSIS, temperature 277.0K
Crystal Properties
Matthews coefficientSolvent content
2.2444.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.7α = 90
b = 37.45β = 105.7
c = 32.56γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4BENT CYLINDER2000-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL40B20.70SPring-8BL40B2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.9213.599.50.0746.54.95441554415
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
0.920.9699.50.2192.73.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISFREE R2FXB0.9275374153741511199.50.09720.09720.09660.113RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
6486766
RMS Deviations
KeyRefinement Restraint Deviation
s_non_zero_chiral_vol0.109
s_zero_chiral_vol0.098
s_approx_iso_adps0.09
s_similar_adp_cmpnt0.038
s_anti_bump_dis_restr0.036
s_angle_d0.028
s_from_restr_planes0.028
s_bond_d0.017
s_rigid_bond_adp_cmpnt0.006
s_similar_dist
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms634
Nucleic Acid Atoms
Solvent Atoms166
Heterogen Atoms13

Software

Software
Software NamePurpose
CNSrefinement
SHELXL-97refinement
MOSFLMdata reduction
CCP4data scaling
CNSphasing