1IK1
Solution Structure of an RNA Hairpin from HRV-14
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0 | 100% D2O | 100 mM | 7.0 | ambient | 298 | |
2 | DQF-COSY | 1.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0 | 100% D2O | 100 mM | 7.0 | ambient | 298 | |
3 | TOCSY | 1.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0 | 100% D2O | 100 mM | 7.0 | ambient | 298 | |
4 | 1H,31P-Hetcor | 1.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0 | 100% D2O | 100 mM | 7.0 | ambient | 298 | |
5 | 1H,13C-HMQC | 1.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0 | 100% D2O | 100 mM | 7.0 | ambient | 298 | |
6 | 2D NOESY | 0.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0 | 90% H2O/10% D2O | 100 mM | 7.0 | ambient | 273 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | A total of 172 distance restraints and 40 dihedral angle restraints. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 1 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | ||
2 | processing | NMRPipe | ||
3 | data analysis | NMRDraw | ||
4 | data analysis | NMRView | ||
5 | structure solution | Discover | ||
6 | refinement | Discover |