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CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT TTR Y114C-DATA COLLECTED AT ROOM TEMPERATURE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F41 PDB ENTRY 1F41
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 2M ammonium sulphate, 0.1M sodium citrate, 2% PEG 200, 1% BME, pH 5.0,
VAPOR DIFFUSION, HANGING DROP at 298K, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.24 45.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.517 α = 90 b = 86.14 β = 90 c = 65.554 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MACSCIENCE 1998-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 98.5 0.091 8.9 5.3 17049 17049 16.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 97.2 0.398 4.3 5.3 1661
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1F41 2 19.54 15298 15298 1721 100 0.201 0.201 0.1971 0.235 RANDOM 19.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.41 0.38
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 16.821 p_singtor_nbd 3.5 p_scangle_it 3.373 p_scbond_it 1.926 p_mcangle_it 1.419 p_angle_d 1.212 p_mcbond_it 0.731 p_xhyhbond_nbd 0.201 p_xyhbond_nbd 0.168 p_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 16.821 p_singtor_nbd 3.5 p_scangle_it 3.373 p_scbond_it 1.926 p_mcangle_it 1.419 p_angle_d 1.212 p_mcbond_it 0.731 p_xhyhbond_nbd 0.201 p_xyhbond_nbd 0.168 p_chiral_restr 0.074 p_bond_d 0.008 p_plane_restr 0.004 p_planar_d p_hb_or_metal_coord p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1766 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 24
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement