1HX7

SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF GAMMA DELTA RESOLVASE


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY0.002 M gamma delta resolvase (1-105) U-15N; 0.020 M phosphate buffer, pH 6.5; 90% H2O, 10% D2O90% H2O/10% D2O1M6.51 atm298
2HNHA0.002 M gamma delta resolvase (1-105) U-15N; 0.020 M phosphate buffer, pH 6.5; 90% H2O, 10% D2O90% H2O/10% D2O1M6.51 atm298
33D_13C-separated_NOESY0.002 M gamma delta resolvase (1-105) U-15N,13C; 0.020 M phosphate buffer, pH 6.5; 90% H2O, 10% D2O90% H2O/10% D2O1M6.51 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics and simulated annealingThe NMR restraints included 2109 useful NOE determined upper distance restraints, 35 hydrogen bonds, and 297 torsion angle restraints. Structures were calculated in the DYANA using torsion angle dynamics. The calculation started with 200 randomized structures. The 19 structures with the lowest target function were refined within XPLOR using simulated annealing. The 19 refined structural conformers displayed no NOE violations >0.3 angstroms and no dihedral angle violations >3 degrees.VNMR
NMR Ensemble Information
Conformer Selection Criterialowest energy and agreement with experimental NOESY
Conformers Calculated Total Number200
Conformers Submitted Total Number19
Representative Model1 (n/a)
Additional NMR Experimental Information
DetailsThe structure was determined using triple-resonance 3D NMR spectroscopy for resonance assignments and double-resonance 3D NMR spectroscopy for obtaining NOESY data.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1Varian
2processingNMRPipe1.7Delaglio
3data analysisXEASY1.3.13Xia and Bartels
4structure solutionDYANA1.5Guentert
5refinementXPLOR4.0Brunger