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SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YOI PDB ENTRY 1YOI
Crystallization Crystal Properties Matthews coefficient Solvent content 1.87 34.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.453 α = 90 b = 29.444 β = 106.32 c = 35.328 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE RIGAKU 1997-03-10 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 80.1 0.044 32.7 3.1 11674
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 73.1 0.244 6.4 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER FREE R PDB ENTRY 1YOI 1.7 5 10947 1094 79.9 0.1663 0.1617 0.1611 0.2515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1352.4
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.105 s_zero_chiral_vol 0.042 s_non_zero_chiral_vol 0.041 s_angle_d 0.017 s_from_restr_planes 0.015 s_anti_bump_dis_restr 0.006 s_bond_d 0.005 s_similar_dist 0.004 s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1217 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 50
Software Software Software Name Purpose SHELXL-96 model building X-PLOR model building SHELXL-96 refinement X-PLOR refinement XDS data reduction XSCALE data scaling SHELXL-96 phasing X-PLOR phasing