Solution nmr structure of the dimerization domain of the yeast transcriptional activator Gal4 (residues 50-106)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY (1H | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| 2 | 13C | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| 3 | 15N) | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| 4 | HNHA | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| 5 | HNHB | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| 6 | HNCA | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| 7 | HN(CO)CA | 50 MM SODIUM PHOSPHATE | 7.4 | 308 | ||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | UP 750 | 750 |
| 2 | Bruker | UP 400 | 600 |
| 3 | Bruker | AMX | 500 |
| 4 | Bruker | AMX | 400 |
| 5 | Varian | INOVA | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| SIMULATED ANNEALING PROTOCOL | C2 SYMMETRY WAS ENFORCED IN THE STRUCTURE CALCULATIONS. | CNS |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOWEST ENERGY AND MINIMAL NOE DERIVED DISTANCE RESTRAINTS VIOLATIONS |
| Conformers Calculated Total Number | 300 |
| Conformers Submitted Total Number | 17 |
| Representative Model | 1 (n/a) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN | |
| 2 | structure solution | CNS | ||














