1HAU

X-RAY STRUCTURE OF A BLUE COPPER NITRITE REDUCTASE AT HIGH PH AND IN COPPER FREE FORM AT 1.9 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.530% PEG 4K, 0.1M MAGNESIUM CHLORIDE, 0.1M TRIS-HCL PH8.5, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
2.6252.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.978α = 90
b = 80.978β = 90
c = 99.781γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEFUJITORROIDAL MIRROR1999-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6APhoton FactoryBL-6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.933.1592.30.05910.83.32694311.19
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9283.90.312.42.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NDT MONOMER1.92025520140691.30.1560.1540.19RANDOM18.47
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.2
p_staggered_tor13.5
p_planar_tor4.8
p_scangle_it2.583
p_mcangle_it1.724
p_scbond_it1.67
p_mcbond_it1.205
p_multtor_nbd0.235
p_singtor_nbd0.164
p_xyhbond_nbd0.115
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.2
p_staggered_tor13.5
p_planar_tor4.8
p_scangle_it2.583
p_mcangle_it1.724
p_scbond_it1.67
p_mcbond_it1.205
p_multtor_nbd0.235
p_singtor_nbd0.164
p_xyhbond_nbd0.115
p_angle_d0.028
p_plane_restr0.028
p_bond_d0.01
p_angle_deg
p_planar_d
p_hb_or_metal_coord
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2575
Nucleic Acid Atoms
Solvent Atoms177
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
AMoREphasing