1H95
Solution structure of the single-stranded DNA-binding Cold Shock Domain (CSD) of human Y-box protein 1 (YB1) determined by NMR (10 lowest energy structures)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 15N-EDITED NOESY | 0 | 6.7 | 1 atm | 303 | |||
2 | 15N-EDITED ROESY | 0 | 6.7 | 1 atm | 303 | |||
3 | 13C-EDITED NOESY | 0 | 6.7 | 1 atm | 303 | |||
4 | HNHA | 0 | 6.7 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
3 | Bruker | DRX | 750 |
NMR Refinement | ||
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Method | Details | Software |
TORSION ANGLE DYNAMICS FOLLOWED BY RESTRAINED MD | RESTRAINED MD | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 15N AND 15N/13C LABELLED COLD SHOCK DOMAIN OF HUMAN YB-1 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | X-PLOR | NILGES |
2 | structure solution | NMRPipe | ||
3 | structure solution | PIPP | ||
4 | structure solution | X-PLOR |