1GZI

CRYSTAL STRUCTURE OF TYPE III ANTIFREEZE PROTEIN FROM OCEAN POUT, AT 1.8 ANGSTROM RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.650% AMMONIUM SULFATE, 0.1M SODIUM ACETATE, PH 5.6
Crystal Properties
Matthews coefficientSolvent content
2.0639.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.55α = 90
b = 39.3β = 90
c = 45.52γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1996-07-18M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.81599.70.0656.33.6515521.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.91000.2083.23.6

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIR1.815570999.70.1740.233RANDOM25.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor17.6
p_transverse_tor7.2
p_scangle_it6.02
p_planar_tor5.1
p_scbond_it4.01
p_mcangle_it2.02
p_mcbond_it1.35
p_multtor_nbd0.255
p_singtor_nbd0.19
p_chiral_restr0.172
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor17.6
p_transverse_tor7.2
p_scangle_it6.02
p_planar_tor5.1
p_scbond_it4.01
p_mcangle_it2.02
p_mcbond_it1.35
p_multtor_nbd0.255
p_singtor_nbd0.19
p_chiral_restr0.172
p_planar_d0.035
p_angle_d0.029
p_bond_d0.011
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms483
Nucleic Acid Atoms
Solvent Atoms54
Heterogen Atoms

Software

Software
Software NamePurpose
CCP4model building
REFMACrefinement
DENZOdata reduction
CCP4data scaling
CCP4phasing