1GYU

Gamma-adaptin appendage domain from clathrin adaptor AP1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.450MM HEPES PH7.4, 0.9M NA/K TARTRATE, 20% W/V GLYCEROL, pH 7.40
Crystal Properties
Matthews coefficientSolvent content
2.0439.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.09α = 90
b = 54.82β = 90
c = 68.01γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORS1998-03-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEELLIOTT GX-13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.812698.70.064153.7119246
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.811.9192.20.24253.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.8142.6410724116498.70.180.1750.223RANDOM18.04
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.27-0.820.54
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.828
r_scbond_it4.146
r_mcangle_it2.75
r_angle_other_deg2.203
r_mcbond_it1.602
r_dihedral_angle_3_deg1.05
r_symmetry_hbond_refined0.327
r_xyhbond_nbd_refined0.258
r_nbd_refined0.242
r_nbd_other0.232
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.828
r_scbond_it4.146
r_mcangle_it2.75
r_angle_other_deg2.203
r_mcbond_it1.602
r_dihedral_angle_3_deg1.05
r_symmetry_hbond_refined0.327
r_xyhbond_nbd_refined0.258
r_nbd_refined0.242
r_nbd_other0.232
r_symmetry_vdw_other0.211
r_symmetry_vdw_refined0.168
r_chiral_restr0.137
r_bond_refined_d0.032
r_xyhbond_nbd_other0.031
r_gen_planes_refined0.011
r_gen_planes_other0.003
r_bond_other_d0.001
r_mcbond_other
r_nbtor_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_dihedral_angle_4_deg
r_nbtor_refined
r_dihedral_angle_2_deg
r_mcangle_other
r_dihedral_angle_1_deg
r_scbond_other
r_angle_refined_deg
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms931
Nucleic Acid Atoms
Solvent Atoms171
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing