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Prostate Specific Antigen (PSA) from stallion seminal plasma
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 10%(W/V) PEG 20000, 0.2M MG(CH3COO)2, 0.1 NA-CACODYLATE PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.74 54.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.668 α = 90 b = 79.104 β = 98.21 c = 45.783 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 20 99.4 0.074 17.9 10 48282
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.47 99.8 0.487 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.42 19.65 45549 2406 100 0.17 0.168 0.206 RANDOM 23.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -0.39 1.12 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.883 r_scangle_it 3.465 r_scbond_it 2.25 r_mcangle_it 1.608 r_angle_refined_deg 1.473 r_mcbond_it 0.874 r_nbd_refined 0.261 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.883 r_scangle_it 3.465 r_scbond_it 2.25 r_mcangle_it 1.608 r_angle_refined_deg 1.473 r_mcbond_it 0.874 r_nbd_refined 0.261 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1851 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing