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CRYSTAL STRUCTURE OF C-MYB R2 V103L MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GV5 PDB ENTRY 1GV5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 297 3.15 M AMMONIUM SULFATE IN 0.05 M MES BUFFER AT PH 6.8, PROTEIN CONCENTRATION 10 MG/ML PLUS 10 MM DTT, TEMPERATURE 297 K
Crystal Properties Matthews coefficient Solvent content 2.24 45.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.951 α = 90 b = 40.114 β = 90 c = 48.807 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MAC Science DIP-2030 MAC SCIENCE DOUBLE MIRROR 1997-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MAC SCIENCE M06XHF22
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 20 98 0.063 38.204 8.657 10332 14.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 95.2 0.2 8.351 6.07
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GV5 1.45 12.45 10307 543 97.9 0.18 0.18 0.195 RANDOM 16.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 -1.24 0.37
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.3 c_scangle_it 4.74 c_scbond_it 3.21 c_mcangle_it 2.8 c_mcbond_it 1.94 c_angle_deg 1.1 c_improper_angle_d 0.72 c_bond_d 0.003 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.3 c_scangle_it 4.74 c_scbond_it 3.21 c_mcangle_it 2.8 c_mcbond_it 1.94 c_angle_deg 1.1 c_improper_angle_d 0.72 c_bond_d 0.003 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 446 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 11
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing