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GLUCOSE OXIDASE FROM PENICILLIUM AMAGASAKIENSE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GAL PDB ENTRY 1GAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 1.3 M AMMONIUM SULPHATE, 0.1 M CITRATE-PO4 BUFFER PH 7.4
Crystal Properties Matthews coefficient Solvent content 2.21 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.6 α = 90 b = 132.1 β = 90 c = 151.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 94.7 0.068 18.4 2.5 101999 12.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.88 90 0.132 8.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GAL 1.8 20 101999 5114 94.7 0.164 0.16 0.1445 0.198 0.1743 RANDOM 14.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 37.8 p_special_tor 15 p_staggered_tor 13.4 p_planar_tor 3.7 p_scangle_it 2.101 p_mcangle_it 1.51 p_scbond_it 1.339 p_mcbond_it 0.95 p_multtor_nbd 0.242 p_singtor_nbd 0.185
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 37.8 p_special_tor 15 p_staggered_tor 13.4 p_planar_tor 3.7 p_scangle_it 2.101 p_mcangle_it 1.51 p_scbond_it 1.339 p_mcbond_it 0.95 p_multtor_nbd 0.242 p_singtor_nbd 0.185 p_xyhbond_nbd 0.158 p_chiral_restr 0.104 p_planar_d 0.03 p_angle_d 0.028 p_plane_restr 0.021 p_bond_d 0.008 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9018 Nucleic Acid Atoms Solvent Atoms 709 Heterogen Atoms 340
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MERLOT phasing REFMAC refinement