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3-D STRUCTURE OF A SALIVARY LIPOCALIN FROM BOAR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EW3 PDB ENTRY 1EW3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 1.95M AS, 0.1M NACI PH 5.5, 0.2M K/NA TARTRATE
Crystal Properties Matthews coefficient Solvent content 2.18 44.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.112 α = 90 b = 70.112 β = 90 c = 71.75 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2001-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 28 99.6 0.056 7.3 3.9 10884 26.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 99.6 0.12 3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EW3 2.13 14.53 2 10107 1063 96.8 0.254 0.254 0.2559 0.282 0.2814 RANDOM 42.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.74 1.74 -3.48
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27 c_scangle_it 2.92 c_mcangle_it 2.12 c_scbond_it 1.97 c_angle_deg 1.7 c_mcbond_it 1.38 c_improper_angle_d 0.96 c_bond_d 0.011 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27 c_scangle_it 2.92 c_mcangle_it 2.12 c_scbond_it 1.97 c_angle_deg 1.7 c_mcbond_it 1.38 c_improper_angle_d 0.96 c_bond_d 0.011 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1284 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 21
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALA data scaling AMoRE phasing