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STRUCTURE OF RECOMBINANT ALPHAEC DOMAIN FROM HUMAN FIBRINOGEN-420
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FCZ PDB ENTRY 1FCZ (GAMMA DOMAIN)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 PROTEIN WAS CRYSTALLIZED BY SITTING DROP VAPOUR DIFFUSION FROM 20% PEG 3350, 0.15 M CACL2, 0.1M IMIDAZOLE- ACETATE PH 5.5 0.002 M SODIUM AZIDE, vapor diffusion - sitting drop
Crystal Properties Matthews coefficient Solvent content 2.58 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.25 α = 104.6 b = 105.18 β = 108.95 c = 71.14 γ = 71.47
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD 1998-02-20 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 91.2 0.098 5.2 110459
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FCZ (GAMMA DOMAIN) 2.1 20 110459 5530 91.2 0.199 0.195 0.255 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_planar_d 27.5 p_scangle_it 6.53 p_scbond_it 5.1 p_mcangle_it 3.7 p_angle_d 3 p_chiral_restr 3 p_mcbond_it 1.98 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord
RMS Deviations Key Refinement Restraint Deviation p_planar_d 27.5 p_scangle_it 6.53 p_scbond_it 5.1 p_mcangle_it 3.7 p_angle_d 3 p_chiral_restr 3 p_mcbond_it 1.98 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_plane_restr p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12680 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 419
Software Software Software Name Purpose SCALEPACK data scaling X-PLOR model building REFMAC refinement X-PLOR refinement X-PLOR phasing