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CRYSTAL STRUCTURE OF THE HEXA-SUBSTITUTED MUTANT OF THE MOLECULAR CHAPERONIN GROEL APICAL DOMAIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KID GROEL(191-376) (PDB ID: 1KID)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 0.75-0.9M POTASSIUM TARTRATE, 50MM MES SODIUM, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.71 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.91 α = 90 b = 84.52 β = 90 c = 35.28 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 38 98 0.128 7.5 11.3 11606 11590 3 24.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.33 90.6 0.47 2.9 3.6
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR GROEL(191-376) (PDB ID: 1KID) 2.2 38 11606 11590 600 98 0.265 0.257 0.2446 0.292 0.2935 RANDOM 32.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.6 p_staggered_tor 16.4 p_scangle_it 4.753 p_scbond_it 3.476 p_planar_tor 2.2 p_mcangle_it 2.014 p_mcbond_it 1.269 p_multtor_nbd 0.25 p_singtor_nbd 0.184 p_xyhbond_nbd 0.164
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.6 p_staggered_tor 16.4 p_scangle_it 4.753 p_scbond_it 3.476 p_planar_tor 2.2 p_mcangle_it 2.014 p_mcbond_it 1.269 p_multtor_nbd 0.25 p_singtor_nbd 0.184 p_xyhbond_nbd 0.164 p_chiral_restr 0.087 p_angle_d 0.024 p_planar_d 0.019 p_plane_restr 0.0162 p_bond_d 0.006 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1380 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 6
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling