☰ Navigation Tabs
CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE OF APPR>P FROM ARABIDOPSIS THALIANA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 285 0.9 M (NH4)2SO4, 0.1 M NaAc, 10% EtOH, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 3.68 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.916 α = 90 b = 125.916 β = 90 c = 209.897 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-02-04 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2000-02-04 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD ADSC QUANTUM 4 2000-02-04 M SINGLE WAVELENGTH 4 1 x-ray 100 CCD ADSC QUANTUM 4 2000-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B 2 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B 3 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B 4 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3,4 2.5 20 98.8 0.081 18 34305 21.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 97.8 0.144 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIR/MAD THROUGHOUT 2.5 19.91 2 28263 2782 81.5 0.196 0.196 0.2111 0.265 0.2788 RANDOM 47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 13.06 13.28 13.06 -26.11
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.1 c_scangle_it 6.66 c_scbond_it 5.1 c_mcangle_it 4.61 c_mcbond_it 3.11 c_angle_deg 2.1 c_improper_angle_d 1.2 c_bond_d 0.018
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4139 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 45
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASES phasing CNS refinement