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MONOCLONAL MURINE ANTIBODY 5G9-ANTI-HUMAN TISSUE FACTOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MCP FABS: HYHEL5-5 AND MCPC603 experimental model PDB 3HFM FABS: HYHEL5-5 AND MCPC603
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 TWO SLIGHTLY DIFFERENT CRYSTAL FORMS OF FAB 5G9 WERE OBTAINED USING 17.5% PEG 10K AT PH 8.5 AND 1.35M SODIUM CITRATE AT PH 5.5 AS PRECIPITANTS. THE TWO CRYSTAL FORMS ARE BOTH ORTHORHOMBIC, P212121, WITH TYPICAL SIZES OF 0.5 X 0.4 X 0.3 MM3 (CITRATE FORM) AND 0.6 X 0.35 X 0.2 MM3 (PEG FORM), WITH SLIGHTLY DIFFERENT CELL PARAMETERS OF A=89.1A, B=90.5A, C=59.3A (CITRATE) AND A=91.6A, B=93.7A, C=60.7A (PEG). PEG FORM IS USED FOR STRUCTURE DETERMINATION., pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.4 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.6 α = 90 b = 93.7 β = 90 c = 60.7 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 297 AREA DETECTOR SIEMENS COLLIMATOR 1992-03-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ELLIOTT GX-18
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 37 90 0.075 20 4.5 19394 30
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.39 2.54 58.5 0.183 4 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT A POSTERIORI FABS: HYHEL5-5 AND MCPC603 2.5 8 16666 1643 92.4 0.217 0.217 0.304 RANDOM 10.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 28.5 x_scangle_it 10.32 x_mcangle_it 6.91 x_scbond_it 6.83 x_mcbond_it 4.28 x_angle_deg 2 x_improper_angle_d 1.67 x_bond_d 0.015 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 28.5 x_scangle_it 10.32 x_mcangle_it 6.91 x_scbond_it 6.83 x_mcbond_it 4.28 x_angle_deg 2 x_improper_angle_d 1.67 x_bond_d 0.015 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3305 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XENGEN data collection XENGEN data reduction X-PLOR model building X-PLOR refinement XENGEN data scaling X-PLOR phasing