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STRUCTURE OF THE HIV-1 MINUS STRAND PRIMER BINDING SITE
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 2 mM (-) PBS oligonucleotide H2O ambient 297 2 2D NOESY 2 mM (-) PBS oligonucleotide D2O (99.9%) ambient 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 GE OMEGA PSG 600
NMR Refinement Method Details Software simulated annealing only restraints for the structured portion of the oligonucleotide (nucleotides 1-14) were used during refinement. NMRPipe
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 1000 Conformers Submitted Total Number 20 Representative Model 1 (smallest target function)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 1.7 Delaglio 2 data analysis NMRView 3 Johnson 3 structure solution DYANA 1.5 Guntert 4 refinement DYANA 1.5 Guntert