SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 2 mM (-) PBS oligonucleotide | H2O | ambient | 297 | |||
| 2 | 2D NOESY | 2 mM (-) PBS oligonucleotide | D2O (99.9%) | ambient | 278 | |||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| 2 | GE | OMEGA PSG | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | only restraints for the structured portion of the oligonucleotide (nucleotides 1-14) were used during refinement. | NMRPipe |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 1000 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (smallest target function) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 1.7 | Delaglio |
| 2 | data analysis | NMRView | 3 | Johnson |
| 3 | structure solution | DYANA | 1.5 | Guntert |
| 4 | refinement | DYANA | 1.5 | Guntert |
