1EF4

SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D METHYL-METHYL 13C_ SEPARATED NOESY0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O150mM_NACL7.50AMBIENT303.00
22D NOESY0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O150mM_NACL7.50AMBIENT303.00
33D_13C-SEPARATED_ NOESY0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O150mM_NACL7.50AMBIENT303.00
43D_15N-SEPARATED_ NOESY0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O150mM_NACL7.50AMBIENT303.00
5HNHA0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O150mM_NACL7.50AMBIENT303.00
62D CT-HMQC-J0.5MM RPB10 U-15N,13C 20MM DEUTERATED D-TRIS; 0.15M NACL; 2MM BETA- MERCAPTOETHANOL; 99% D2O, 1% H2O150mM_NACL7.50AMBIENT303.00
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITY500
NMR Refinement
MethodDetailsSoftware
DISTANCE GEOMETRY WITH SIMULATED ANNEALINGREFINED USING ARIA AMBIGUOUS AND UNAMBIGUOUS RESTRAINTS, AND INCLUDING RESTRAINTS FOR DIHEDRAL ANGLES AND HYDROGEN BOND DISTANCES. ZINC COORDINATION TO CYS 6,9,43,44 WITH IDEALIZED TETRAHEDRAL RESTRAINTS WERE ADDED IN THE FINAL ROUNDS OF REFINEMENT; THE COORDINATING LIGANDS AND THEIR GEOMETRIC ARRANGEMENT WERE IDENTIFIED BASED ON INITIAL NOE-DERIVED STRUCTURES CALCULATED WITHOUT INCLUSION OF THE METAL ION. THREE N- TERMINAL RESIDUES (GLY-SER-HIS) REMAINING FROM CLEAVAGE OF THE HIS-TAG WERE DISORDERED AND NOT INCLUDED IN THE FINAL ENSEMBLE.X-PLOR 3.851, ARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry
Conformers Calculated Total Number60
Conformers Submitted Total Number20
Representative Model1 (n/a)
Additional NMR Experimental Information
DetailsTHIS STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE NMR SPECTROSCOPY.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR 3.851, ARIA1999BRUNGER (X-PLOR), NILGES (ARIA)
2structure solutionVNMR6
3structure solutionFelix95.0