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MYROSINASE FROM SINAPIS ALBA with bound ascorbate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E4M PDB ENTRY 1E4M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 HANGING DROP METHOD, 12 MG/ML PROTEIN IN 30 MM HEPES, PH 6.5, 0.05 % NAN3 PRECIPITANT 66 % SAT. AMMONIUM SULFATE, 100MM TRIS-HCL PH 7.0
Crystal Properties Matthews coefficient Solvent content 3.2 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.3 α = 90 b = 137.2 β = 90 c = 80.6 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MULTILAYER, SAGITALLY FOCUSING CRYSTAL 1997-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 37.8 95.6 0.065 0.065 5.8 3.7 110239
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 91.5 0.294 0.294 2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E4M 1.5 10 106788 5441 89.7 0.127 0.152 0.1764 RANDOM 19.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.5 p_staggered_tor 11.5 p_planar_tor 8.5 p_scangle_it 3.8 p_mcangle_it 3 p_scbond_it 2.8 p_mcbond_it 2.2 p_multtor_nbd 0.31 p_singtor_nbd 0.17 p_xyhbond_nbd 0.167
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.5 p_staggered_tor 11.5 p_planar_tor 8.5 p_scangle_it 3.8 p_mcangle_it 3 p_scbond_it 2.8 p_mcbond_it 2.2 p_multtor_nbd 0.31 p_singtor_nbd 0.17 p_xyhbond_nbd 0.167 p_chiral_restr 0.126 p_planar_d 0.044 p_angle_d 0.034 p_plane_restr 0.028 p_bond_d 0.019 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4016 Nucleic Acid Atoms Solvent Atoms 798 Heterogen Atoms 333
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Agrovata data scaling ROTAVATA data scaling X-PLOR phasing