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PLASMA ALPHA ANTITHROMBIN-III AND PENTASACCHARIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 5MG/ML 1:1 MIX OF INHIBITORY: LATENT ANTITHROMBIN-III 16% PEG 4000, 63 MM NACACODYLATE PH 7.0, 0.05% AZIDE
Crystal Properties Matthews coefficient Solvent content 2.83 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.511 α = 90 b = 87.071 β = 108.88 c = 97.349 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 94.2 0.124 5.2 2.5 23386
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AZX 2.9 20 1180 94.2 0.199 0.252 44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 23.2 p_transverse_tor 22.8 p_scangle_it 6.495 p_mcangle_it 4.641 p_scbond_it 4.306 p_mcbond_it 2.638 p_planar_tor 2.5 p_chiral_restr 0.265 p_multtor_nbd 0.214 p_xhyhbond_nbd 0.16
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 23.2 p_transverse_tor 22.8 p_scangle_it 6.495 p_mcangle_it 4.641 p_scbond_it 4.306 p_mcbond_it 2.638 p_planar_tor 2.5 p_chiral_restr 0.265 p_multtor_nbd 0.214 p_xhyhbond_nbd 0.16 p_singtor_nbd 0.15 p_xyhbond_nbd 0.136 p_angle_d 0.022 p_bond_d 0.009 p_planar_d 0.009 p_plane_restr 0.004 p_angle_deg p_hb_or_metal_coord p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6614 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 373
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing