Experiment: 1DMR

OXIDIZED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1EU1	DMSO REDUCTASE FROM RHODOBACTER SPHAEROIDES

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5.5		0.1M CITRATE BUFFER, PH 4.8 - 5.2 20 - 23% PEG 4000 20% ETHANOL, pH 5.5

Crystal Properties
Matthews coefficient	Solvent content
2.1	34.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 80.88	α = 90
b = 80.88	β = 90
c = 229.7	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	277	IMAGE PLATE	MARRESEARCH	MIRRORS	1996-05-17	M

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX9.5		SRS	PX9.5

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.82	16.51	97.4	0.078	7.4	3.8		66800

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.82	1.94	91		0.269	2.8	3.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	ISOMORPHOUS REPLACEMENT AND MOLECULAR REPLACEMENT	DMSO REDUCTASE FROM RHODOBACTER SPHAEROIDES	1.82	20	68911	3441	97.4	0.147	0.1379	0.18367	0.1717	EVERY 20TH

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6422
Nucleic Acid Atoms
Solvent Atoms	536
Heterogen Atoms	95

Software

Software
Software Name	Purpose
CCP4	model building
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
CCP4	phasing