1DL4

THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL0.1 M NACL7.01 atm278
22D NOESY1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL0.1 M NACL7.01 atm283
32D NOESY1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL0.1 M NACL7.01 atm298
42D ROESY1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL0.1 M NACL7.01 atm298
5DQF-COSY1.7 MM OLIGODEOXYNUCLEOTIDE; 10 MM PHOSPHATE BUFFER; 0.05 MM EDTA; 0.1 M NACL0.1 M NACL7.01 atm283
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX750
2BrukerDRX500
NMR Refinement
MethodDetailsSoftware
NOE-RESTRAINTED MOLECULAR DYNAMICS /SIMULATED ANNEALINGTHE STRUCTURE IS BASED ON A TOTAL OF 477 NOE-DERIVED DISTANCE CONSTRAINTS, 80 EMPIRICAL SUGAR PUCKER RESTRAINTS, 32 BACKBONE ANGLE DIHEDRAL RESTRAINTS, AND 18 EMPIRICAL PLANARITY RESTRAINTS.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number7
Conformers Submitted Total Number1
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsTHIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.0BRUKER
2structure solutionX-PLOR3.851A.BRUNGER
3processingFelix97.0BIOSYM TECHNOLOGIES
4refinementCORMA5.2BORGIAS, B.A., THOMAS, P.D., LI, H., KUMAR, A., AND TONELLI, M.
5iterative matrix relaxationMARDIGRAS3.0BORGIAS, B.A., THOMAS, P.D., LI, H., KUMAR, A., AND TONELLI, M.