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NMR SOLUTION STRUCTURE OF COMPLEMENT-LIKE REPEAT CR3 FROM THE LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN (LRP). EVIDENCE FOR SPECIFIC BINDING TO THE RECEPTOR BINDING DOMAIN OF HUMAN ALPHA-2 MACROGLOBULIN
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D_15N-SEPARATED TOCSY
2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O
20 mM NA-D3-ACETATE, 10 mM CACL2
5.5
AMBIENT
298
2
3D_13C-SEPARATED TOCSY
2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O
20 mM NA-D3-ACETATE, 10 mM CACL2
5.5
AMBIENT
298
3
3D_15N-SEPARATED_NOESY
2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O
20 mM NA-D3-ACETATE, 10 mM CACL2
5.5
AMBIENT
298
4
3D_13C-SEPARATED_NOESY
2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O
20 mM NA-D3-ACETATE, 10 mM CACL2
5.5
AMBIENT
298
5
HBHA(CO)NH
2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O
20 mM NA-D3-ACETATE, 10 mM CACL2
5.5
AMBIENT
298
6
CBCA(CO)NH
2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O
20 mM NA-D3-ACETATE, 10 mM CACL2
5.5
AMBIENT
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DRX
600
NMR Refinement
Method
Details
Software
MOLECULAR DYNAMICS ENERGY MINIMIZATION
THE STRUCTURES ARE BASED ON 602 NOE CONSTRAINTS, 9 DISTANCE CONSTRAINTS FOR THE CALCIUM BINDING SITE, 3 DISULFIDE BRIDGES, 10 HYDROGEN BONDS AND FIVE DIHEDRAL ANGLE CONSTRAINTS.
SYBYL
NMR Ensemble Information
Conformer Selection Criteria
STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST ENERGY
Conformers Calculated Total Number
40
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. 20 STRUCTURES IN THE DEPOSITION WERE FITTED BY FITTING STRUCTURES 2-20 TO THE FIRST, USING PROFIT V1.8 (MCLACHLAN, A. D., 1982 ACTA. CRYST.A38, 871-3) AS IMPLEMENTED IN THE PROGRAM PROFIT (MARTIN, A. C. R.,HTTP:// WWW.BIOCHEM.UCL.AC.UK/~MARTIN/PROGRAMS/#PROFIT)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
processing
SYBYL
6.3
TRIPOS INC.
2
structure solution
DYANA
1.5
GUNTERT, P., MUMENTHALER, C., AND WUTHRICH, K. (1997) JMB 273, 283-98
3
refinement
Amber
5.0
CASE, D. A., ET AL. (1997) AMBER 5, UNIV. OF CALIFORNIA, SAN FRANCISCO, UNPUBLISHED