1CVD

STRUCTURAL CONSEQUENCES OF REDESIGNING A PROTEIN-ZINC BINDING SITE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthew coefficientSolvent content
2.243.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.7α = 90
b = 41.7β = 104.6
c = 73γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.272100140.184
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor24.5
p_staggered_tor16
p_planar_tor2.1
p_mcangle_it0.618
p_scangle_it0.587
p_mcbond_it0.36
p_scbond_it0.342
p_multtor_nbd0.225
p_xhyhbond_nbd0.206
p_singtor_nbd0.187
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor24.5
p_staggered_tor16
p_planar_tor2.1
p_mcangle_it0.618
p_scangle_it0.587
p_mcbond_it0.36
p_scbond_it0.342
p_multtor_nbd0.225
p_xhyhbond_nbd0.206
p_singtor_nbd0.187
p_chiral_restr0.087
p_angle_d0.033
p_planar_d0.027
p_bond_d0.014
p_plane_restr0.006
p_xyhbond_nbd
p_hb_or_metal_coord
p_angle_deg
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2025
Nucleic Acid Atoms
Solvent Atoms113
Heterogen Atoms1

Software

Software
Software NamePurpose
PROLSQrefinement