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GELATINASE A (FULL-LENGTH)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GEN PDB ENTRY 1GEN, PDB ENTRY 1FBL experimental model PDB 1FBL PDB ENTRY 1GEN, PDB ENTRY 1FBL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 pH 7.8
Crystal Properties Matthews coefficient Solvent content 4.49 72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.32 α = 90 b = 121.32 β = 90 c = 345.11 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 1997-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM02 ESRF BM02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 34 99.7 0.117 20.9 10.2 32057 105
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.98 95.4 0.403 2 10.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1GEN, PDB ENTRY 1FBL 2.8 34 30959 1660 99.7 0.286 0.327 RANDOM 63.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_mcbond_it 1.7 p_angle_d 0.024 p_bond_d 0.012 p_angle_deg p_planar_d p_hb_or_metal_coord p_mcangle_it p_scbond_it p_scangle_it p_plane_restr
RMS Deviations Key Refinement Restraint Deviation p_mcbond_it 1.7 p_angle_d 0.024 p_bond_d 0.012 p_angle_deg p_planar_d p_hb_or_metal_coord p_mcangle_it p_scbond_it p_scangle_it p_plane_restr p_chiral_restr p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4930 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms 17
Software Software Software Name Purpose XDS data scaling SCALA data scaling AMoRE phasing REFMAC refinement XDS data reduction CCP4 data scaling