☰ Navigation Tabs
CRYSTAL STRUCTURE OF BOVINE SUPEROXIDE DISMUTASE CRYSTAL.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1COB PDB ENTRY 1COB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.9 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.77 α = 90 b = 51.13 β = 90 c = 147.99 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH MIRRORS 1997-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 15 89.1 0.066 7.3 4.4 39196 15.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.69 68.2 0.157 4.6 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1COB 1.65 8 44556 44556 1195 90 0.186 0.185 0.228 RANDOM 23.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 37.4 p_special_tor 15 p_staggered_tor 13.5 p_planar_tor 3.8 p_scangle_it 3.545 p_scbond_it 2.269 p_mcangle_it 2.143 p_mcbond_it 1.422 p_multtor_nbd 0.255 p_singtor_nbd 0.175
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 37.4 p_special_tor 15 p_staggered_tor 13.5 p_planar_tor 3.8 p_scangle_it 3.545 p_scbond_it 2.269 p_mcangle_it 2.143 p_mcbond_it 1.422 p_multtor_nbd 0.255 p_singtor_nbd 0.175 p_xyhbond_nbd 0.108 p_planar_d 0.028 p_angle_d 0.027 p_plane_restr 0.022 p_bond_d 0.011 p_chiral_restr 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2166 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction CCP4 data reduction AMoRE phasing REFMAC refinement CCP4 data scaling